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Muir Woods Shuttle Supplemental School and yellow bus routes are provided to support various K-12 schools within Marin County. These trips operate on school days only and meet most bell schedules.
School route schedules may change frequently, so keep in touch through Customer Service or your school liaison.
| School | City | Bus Services |
| Larkspur-Corte Madera School District | ||
| Cove School | Corte Madera | Yellow Bus |
| Hall Middle School | Larkspur | 29 | 613 |
| Neil Cummins Elementary School | Corte Madera | 22 | 613 |
| Mill Valley School District | ||
| Mill Valley Middle School | Mill Valley | 17 | 61 |
| Strawberry Elementary School | Mill Valley | 17 | 36 |
| Miller Creek School District | ||
| Lucas Valley Elementary School | Marinwood | Yellow Bus |
| Mary E. Silveira Elementary School | Marinwood | Yellow Bus |
| Vallecito Elementary School | Terra Linda | 35 | 57 | 245 | Yellow Bus |
| Miller Creek Middle School | Marinwood | 57 | Yellow Bus |
| Novato Unified School District | ||
| Novato High School | Novato | 49 | 57 |
| San Jose Middle School | Novato | 57 |
| San Marin High School | Novato | 49 | 654 |
| Sinaloa Middle School | Novato | 654 |
| Reed Union School District | ||
| Bel Aire Elementary School | Tiburon | Yellow Bus |
| Del Mar Middle School | Tiburon | 219 | 619 | Yellow Bus |
| Reed Elementary School | Tiburon | Yellow Bus |
| Ross Valley School District | ||
| Hidden Valley School | San Anselmo | Yellow Bus |
| White Hill School | Fairfax | 23 | 68 | 228 | 625 | Yellow Bus |
| San Rafael City Schools | ||
| San Rafael High School | San Rafael | 23 | 35 | 36 |
| Terra Linda High School | Terra Linda | 35 | 57 | 245 |
| Davidson Middle School | San Rafael | 23 | 35 | 36 | Yellow Bus |
| Venetia Valley K-8 | Santa Venetia | 233 | Yellow Bus |
| Bahia Vista Elementary School | San Rafael | 23 | 35 | 36 | Yellow Bus |
| Coleman Elementary School | San Rafael | Yellow Bus |
| Glenwood Elementary School | San Rafael | Yellow Bus |
| Laurel Dell Elementary School | San Rafael | Yellow Bus |
| San Pedro Elementary School | San Rafael | Yellow Bus |
| Sun Valley Elementary School | San Rafael | Yellow Bus |
| Sausalito-Marin City School District | ||
| MLK - Nevada St Campus | Sausalito | Yellow Bus |
| MLK - Philips Campus | Marin City | 17 | 61 |
| Tamalpais Union High School District | ||
| Redwood High School | Larkspur | 29 | 613 | 619 |
| San Andreas School | Larkspur | 29 | 613 | 619 |
| Archie Williams High School | San Anselmo | 23 | 68 | 228 | 625 |
| Tamalpais High School | Mill Valley | 17 | 61 |